Contributors

EDAM Developers

  • Jon Ison (DTU, DK) lead developer
  • Matúš Kalaš (University of Bergen, NO)
  • Hervé Ménager (Institut Pasteur, FR)
  • Veit Schwämmle (SDU, DK)

EDAM Editors

Official EDAM Editors are now part of the Thematic Editors group serving both EDAM and bio.tools.

EDAM Advisory Group

  • Alfonso Valencia (ELIXIR ES)
  • Anna-Lena Lamprecht (University of Potsdam, DE)
  • Cath Brooksbank (ELIXIR EMBL-EBI)
  • Christophe Blanchet (ELIXIR FR)
  • Hedi Peterson (ELIXIR EE)
  • Heinz Stockinger (ELIXIR CH)
  • Inge Jonassen (ELIXIR NO)
  • Karel Berka (ELIXIR CZ)
  • Michael Crusoe
  • Søren Brunak (ELIXIR DK)
  • Steven Newhouse (ELIXIR EMBL-EBI)

Note

We hope soon to expand the Advisory Group to include representatives of all the projects and groups which are using, or seriously considering using EDAM, including (non-exhaustive list):

Project Description Possible representative
bio.tools ELIXIR Tools and Data Services Registry. Hans-Ioan Lenasescu?
Bioschema Fosters the use of schema.org within the life sciences. Alasdair Gray?, Giuseppe Profiti?
BISE Bioimage Informatics Search Engine (uses EDAM-Bioimaging). Perrine Paul-Gilloteaux?
CWL / CWLProv
Open standard for describing analysis workflows and tools in a way that makes them portable and scalable.
Michael Crusoe
Debian Med Debian flavour well fit for medical practice and biomedical research. Steffen Möller?
DSEO Data Science Education Ontology Lily Fierro
EMBL EBI (tools) Tools and data resources from EMBL-EBI Jonathon Hickford? Rodrigo Lopez?
EMBL EBI (training) Training resources from EMBL-EBI Laura Emery?
Galaxy Open source, web-based platform for data intensive biomedical research. Björn Gruening? John Chilton?
H3Africa eGenomics Catalogue Consortium to empower African researchers in genomic sciences. tbd
Identifiers.org Resolving system for referencing of data for the scientific community. Sarala Wimalaratne?
IFB RAINBIO Bioinformatics Cloud Appliances Bioinformatics cloud appliances registry from the IFB. Christophe Blanchet
IFB catalogue Bioinformatics resource catalogue from the IFB. Jacques Van Helden, Hervé Menager
PROPHETS workflow synthesis Workflow synthesis using EDAM. Anna-Lena Lamprecht
TeSS ELIXIR’s training portal; browse and discover life sciences training resources. Niall Beard?
The flora phenotype ontology (FLOPO)   Robert Hoehndorf
Pathogen-Host Interaction Database (PHI-base)   Robert Hoehndorf
Subject Resource Application Ontology   Allyson Lister
Software ontology   Allyson Lister
BIOLITMAP   Bazaga, A
APE   Anna-Lena Lamprecht

Contributors

Thanks to the many people who have contributed - if you’re not listed below, please let us know!

  • Marie Grosjean (IFB, FR)
  • Nathalie Conte (EMBL-EBI, UK)
  • Victor de la Torre (ELIXIR-ES)
  • Ray Fergerson (Stanford University, USA)
  • Carole Goble (ELIXIR-UK)
  • Simon Jupp (EMBL-EBI, UK)
  • Peter Løngreen (CBS-DTU, DK)
  • Allyson Lister (Newcastle University, UK)
  • Rodrigo Lopez (EMBL-EBI, UK)
  • James Malone (EMBL-EBI, UK)
  • Julie McMurry (EMBL-EBI, UK)
  • Hamish McWilliam (formerly EMBL-EBI, UK)
  • Helen Parkinson (EMBL-EBI, UK)
  • Steve Pettifer (University of Manchester, UK)
  • Kristoffer Rapacki (CBS-DTU, DK)
  • Peter Rice (Imperial College, UK)
  • Mahmut Uludag (EMBL-EBI, UK)
  • Jiří Vondrášek (IOCB AS, CZ)
  • Gert Vriend (CMBI, NL)
  • Trish Whetzel (University of California, USA)
  • David Sehnal (MU, CZ)
  • Dmitry Repchevsky (BSC, ES)
  • Ivan Mičetić (University of Padova, IT)
  • Kristian Davidsen (DTU, DK)
  • Laura Emery (EMBL-EBI, UK)
  • Lukáš Pravda (MU, CZ)
  • Stanislav Geidl (MU, CZ)
  • Wouter Touw (CMBI, NL)

Recent workshops (2014 - )

Thank you to all of the participants of various meetings and workshops organised by ELIXIR, BioMedBridges and others. See the complete list of past and forthcoming workshops.